Portfolio
We work with many groups both within and external to the University of Colorado:
- Greene Lab
- TISLab
- Way Lab
- JRaviLab
- Krishnan Lab
- BioThings.io
- The Wiley Lab
- …and more!
Projects
![MolEvolvR](/set-website/images/molevolvr.png)
A web app that enables researchers to run a general-purpose computational workflow for characterizing the molecular evolution and phylogeny of their proteins of interest.
![Pycytominer](https://raw.githubusercontent.com/WayScience/pycytominer/master/logo/just-icon.png?raw=true)
A suite of common functions used to process high dimensional readouts from high-throughput cell experiments.
A Python package which enables large data processing to enhance single-cell morphology data analysis.
![Simplex](https://raw.githubusercontent.com/krishnanlab/simplex/main/app/public/share.jpg?raw=true)
A web app and supporting backend for simplifying scientific and medical writing.
![MyGeneset.info](https://mygeneset.info/share-thumbnail.jpg)
A web app built from scratch to allow users to collect, save, and share sets of genes. A geneSET companion to MyGene.info.
![Word Lapse](https://raw.githubusercontent.com/greenelab/word-lapse/main/app/public/share-thumbnail.jpg)
A frontend web app and supporting backend server that allows users to explore how a word changes in meaning over time based on natural language processing machine learning.
![Monarch Initiative UI](/set-website/images/monarch-ui.jpg)
A redesign and rewrite of the Monarch Initiative application from the ground up, designed to be more modern, maintainable, robust, and accessible.
![Monarch Initiative Cloud Migration](/set-website/images/monarch-cluster.jpg)
A migration of the all Monarch Initiative backend and associated services from physical hardware to Google Cloud, including automated provisioning and deployment via Terraform, Ansible, and Docker Swarm.
![GraphDB Deployer](/set-website/images/graphdb-deployer.jpg)
Automates the parsing and transformation of a KGX archive into graphdb-ready formats. After the archive is converted, automates provisioning and deployment of Neo4j and Blazegraph instances from a KGX archive.
![Lab Website Template](https://raw.githubusercontent.com/greenelab/lab-website-template/main/images/share.jpg?raw=true)
An easy-to-use, flexible website template for labs. What this very site is built on!